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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs9876781 1 rs725310 chr3:48418571 TREX1 chr3:48501186-48509043:+ 0.37 4.72 1.68E-5 Longevity
UVM cis rs10242455 1 rs73395547 chr7:98922746 PTCD1 chr7:99016751-99063808:- 0.7 4.85 1.07E-5 Blood metabolite levels
UVM cis rs10242455 1 rs73395557 chr7:98934424 PTCD1 chr7:99016751-99063808:- 0.7 4.85 1.07E-5 Blood metabolite levels
UVM cis rs12971120 1 rs734559 chr18:72179579 CNDP2 chr18:72163597-72188356:+ 0.72 5.41 1.41E-6 Refractive error
UVM cis rs10935120 1 rs7356093 chr3:134238753 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs7371896 chr3:134249769 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs7374158 chr3:134270156 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs7374325 chr3:134275601 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs11190604 1 rs74210981 chr10:102287520 SEC31B chr10:102246403-102289636:- -0.39 -5.1 4.38E-6 Palmitoleic acid (16:1n-7) plasma levels
UVM cis rs10935120 1 rs7426847 chr3:134267519 ANAPC13 chr3:134196547-134204865:- -0.46 -6.87 6.1E-9 Height
UVM cis rs10935120 1 rs7427492 chr3:134261654 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs7428326 chr3:134251184 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs7429866 chr3:134236306 ANAPC13 chr3:134196547-134204865:- -0.46 -6.87 6.1E-9 Height
UVM cis rs10935120 1 rs7432268 chr3:134242051 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs7433663 chr3:134235790 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height